![]() ![]() MAY supply a *child* term of MS:1002658 ( identification parameter) only onceĮ.g.: MS:1002496 ( group PSMs by sequence)Į.g.: MS:1002497 ( group PSMs by sequence with modifications)Į.g.: MS:1002498 ( group PSMs by sequence with modifications and charge) MAY supply term MS:1002491 ( modification localization scoring) only once MAY supply term MS:1002494 ( cross-linking search) only once ![]() MAY supply a *child* term of MS:1001066 ( ions series considered in search) one or more times MAY supply term MS:1002490 ( peptide-level scoring) only once MAY supply a *child* term of MS:1002489 ( special processing) one or more timesĮ.g.: MS:1002490 ( peptide-level scoring)Į.g.: MS:1002491 ( modification localization scoring)Į.g.: MS:1002493 ( sample pre-fractionation)Į.g.: MS:1002495 ( no special processing)Į.g.: MS:1002635 ( proteogenomics search) MAY supply a *child* term of MS:1002473 ( ion series considered in search) one or more times MAY supply a *child* term of MS:1000044 ( dissociation method) one or more timesĮ.g.: MS:1000136 ( surface-induced dissociation)Į.g.: MS:1000242 ( blackbody infrared radiative dissociation)Į.g.: MS:1000250 ( electron capture dissociation)Į.g.: MS:1000262 ( infrared multiphoton dissociation)Į.g.: MS:1000282 ( sustained off-resonance irradiation)Į.g.: MS:1000433 ( low-energy collision-induced dissociation)Į.g.: MS:1000598 ( electron transfer dissociation) MAY supply term MS:1002635 ( proteogenomics search) only once MAY supply a *child* term of MS:1001302 ( search engine specific input parameter) one or more timesĮ.g.: MS:1001005 ( SEQUEST:CleavesAt) WARNING: Term has no definition!Į.g.: MS:1001009 ( SEQUEST:DescriptionLines)Į.g.: MS:1001026 ( SEQUEST:NormalizeXCorrValues) WARNING: Term has no definition!Į.g.: MS:1001028 ( SEQUEST:SequenceHeaderFilter)Į.g.: MS:1001032 ( SEQUEST:SequencePartialFilter) WARNING: Term has no definition!Į.g.: MS:1001037 ( SEQUEST:ShowFragmentIons) Path /MzIdentML/AnalysisProtocolCollection/SpectrumIdentificationProtocol/AdditionalSearchParams The search parameters other than the modifications searched.Ī single entry from an ontology or a controlled vocabulary. The collection of input and output data sets of the analyses.Īny bibliographic references associated with the file The collection of protocols which include the parameters and settings of the performed analyses. Analyses are for example: SpectrumIdentification (resulting in peptides) or ProteinDetection (assemble proteins from peptides). The analyses performed to get the results, which map the input and output data sets. The collection of sequences (DBSequence or Peptide) identified and their relationship between each other (PeptideEvidence) to be referenced elsewhere in the results. If a composite sample has been analysed, the subsample association can be used to build a hierarchical description. The samples analysed can optionally be recorded using CV terms for descriptions. The complete set of Contacts (people and organisations) for this file. The Provider of the mzIdentML record in terms of the contact and software. The software packages used to perform the analyses. The list of controlled vocabularies used in the file. Changes to z should not affect prevent instance documents from validating. The version of the schema this instance document refers to, in the format x.y.z. The potentially ambiguous common identifier, such as a human-readable name for the instance. a document, a set of related documents, or a repository) of its use. The upper-most hierarchy level of mzIdentML with sub-containers for example describing software, protocols and search results (spectrum identifications or protein detection results).Īn identifier is an unambiguous string that is unique within the scope (i.e. ![]()
0 Comments
Leave a Reply. |